Senior Pipeline Engineer - Remote

Overview

The Senior Pipeline Engineer within the Platform group will join a tight-knit, cross-functional team of scientists and engineers. This team is dedicated to developing a scalable and robust platform that will underpin Natera's next generation of clinical assays. You will be instrumental in the design, development, and architecture of software products relevant to the clinical laboratory, while also contributing to cutting-edge R&D, bioinformatics, and high-performance computing initiatives.

In Short

• Join a cross-functional team focused on clinical assay development.
• Design and develop software products for clinical laboratories.
• Contribute to bioinformatics and high-performance computing initiatives.
• Build CI/CD systems and bioinformatics workflows.
• Create standardized code repositories and implement automated pipelines.
• Develop modular Nextflow components for genomic data processing.
• Work with various tech stacks and cloud computing solutions.
• Impact the care of millions of patients through your work.
• Collaborate with scientists and engineers in a dynamic environment.
• Contribute to the advancement of genetic testing and diagnostics.

Requirements

• BS in Computer Science or equivalent program.
• 7+ years of experience in software development.
• Strong experience with GitHub Actions workflows and pipeline optimization.
• Experience with Nextflow and Argo workflows.
• Docker expertise, including multi-stage builds.
• Knowledge of artifact management systems (Artifactory, AWS ECR).
• Experience with AWS Batch or similar cloud computing solutions.
• Proficiency with Git workflows, branch protection, and PR automation.
• Knowledge of common genomics data formats and tools preferred.
• Ability to develop automated testing frameworks for scientific pipelines.

Benefits

• Comprehensive medical, dental, vision, life and disability plans.
• Free testing for employees and their immediate families.
• Generous employee referral program.
• 401k benefits and commuter benefits.
• Pregnancy and baby bonding leave.
• Opportunity to work with a dedicated team in genetic testing.
• Competitive salary and benefits package.
• Work in a diverse and inclusive environment.
• Be part of a company changing the landscape of genetic disease management.
• Career growth opportunities in a dynamic field.